chrom
stringclasses 2
values | pos
int64 10.2k
249M
| ref
stringclasses 4
values | alt
stringclasses 4
values | AC
int64 1
152k
| AN
int64 2
152k
| AF
float64 0
1
| consequence
stringlengths 9
552
| GPN-MSA
float32 -13.59
11.1
|
|---|---|---|---|---|---|---|---|---|
1
| 13,076
|
G
|
A
| 1
| 126,472
| 0.000008
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant
| -0.282616
|
1
| 13,080
|
G
|
A
| 6
| 126,458
| 0.000047
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant
| -0.379909
|
1
| 13,080
|
G
|
T
| 1
| 126,458
| 0.000008
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant
| -1.081155
|
1
| 13,101
|
G
|
C
| 1
| 125,496
| 0.000008
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant
| -1.662915
|
1
| 13,105
|
G
|
C
| 1
| 125,364
| 0.000008
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant
| -0.315361
|
1
| 13,143
|
G
|
C
| 1
| 120,428
| 0.000008
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant
| -1.569383
|
1
| 13,156
|
G
|
C
| 1
| 117,332
| 0.000009
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant
| -0.785703
|
1
| 13,158
|
G
|
T
| 1
| 116,884
| 0.000009
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant
| -1.43913
|
1
| 13,233
|
G
|
C
| 1
| 115,318
| 0.000009
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -6.283753
|
1
| 13,242
|
G
|
C
| 2
| 117,318
| 0.000017
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -3.404681
|
1
| 13,244
|
G
|
A
| 28
| 117,572
| 0.000238
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -3.236122
|
1
| 13,248
|
C
|
G
| 73
| 118,686
| 0.000615
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.65666
|
1
| 13,257
|
T
|
C
| 1
| 119,816
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -3.224306
|
1
| 13,259
|
G
|
A
| 7
| 120,294
| 0.000058
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -2.600431
|
1
| 13,267
|
G
|
C
| 1
| 121,230
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -5.698892
|
1
| 13,268
|
G
|
C
| 1
| 121,302
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.865986
|
1
| 13,270
|
C
|
T
| 9
| 121,068
| 0.000074
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -3.098391
|
1
| 13,271
|
C
|
T
| 8
| 121,208
| 0.000066
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.216898
|
1
| 13,273
|
G
|
C
| 18,928
| 120,690
| 0.156832
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.072508
|
1
| 13,284
|
G
|
A
| 18
| 124,308
| 0.000145
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -0.451389
|
1
| 13,293
|
T
|
C
| 4
| 125,696
| 0.000032
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -2.294964
|
1
| 13,298
|
G
|
C
| 3
| 126,034
| 0.000024
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -3.851629
|
1
| 13,302
|
C
|
T
| 1,158
| 121,598
| 0.009523
|
downstream_gene_variant,non_coding_transcript_exon_variant
| 1.466356
|
1
| 13,303
|
G
|
A
| 23
| 126,540
| 0.000182
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -0.555985
|
1
| 13,304
|
C
|
A
| 1
| 126,650
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.039384
|
1
| 13,305
|
T
|
C
| 2
| 126,640
| 0.000016
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.115784
|
1
| 13,306
|
G
|
A
| 1
| 126,774
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -2.821422
|
1
| 13,309
|
G
|
A
| 1
| 126,766
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.852596
|
1
| 13,313
|
T
|
G
| 13
| 126,966
| 0.000102
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -6.419044
|
1
| 13,315
|
G
|
A
| 7
| 126,932
| 0.000055
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -3.366369
|
1
| 13,315
|
G
|
C
| 1
| 126,932
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -3.563704
|
1
| 13,322
|
G
|
C
| 2
| 127,030
| 0.000016
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.187912
|
1
| 13,323
|
C
|
A
| 3
| 127,070
| 0.000024
|
downstream_gene_variant,non_coding_transcript_exon_variant
| 3.793456
|
1
| 13,324
|
C
|
A
| 3
| 127,038
| 0.000024
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -3.340757
|
1
| 13,326
|
T
|
G
| 1
| 127,162
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| 1.005745
|
1
| 13,329
|
T
|
G
| 1
| 127,084
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.48831
|
1
| 13,335
|
T
|
A
| 1
| 126,554
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -5.790407
|
1
| 13,340
|
G
|
C
| 1
| 126,566
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.694685
|
1
| 13,341
|
C
|
A
| 2
| 126,584
| 0.000016
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.52415
|
1
| 13,344
|
C
|
A
| 2
| 126,342
| 0.000016
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.003247
|
1
| 13,358
|
A
|
G
| 1
| 125,290
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.853381
|
1
| 13,359
|
T
|
C
| 3
| 125,490
| 0.000024
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -3.789448
|
1
| 13,361
|
G
|
A
| 2
| 125,436
| 0.000016
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -4.116364
|
1
| 13,367
|
G
|
C
| 1
| 125,052
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -0.090091
|
1
| 13,370
|
T
|
C
| 7
| 124,728
| 0.000056
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -0.431867
|
1
| 13,372
|
G
|
C
| 7
| 124,508
| 0.000056
|
downstream_gene_variant,non_coding_transcript_exon_variant,splice_region_variant&non_coding_transcript_exon_variant
| -3.689177
|
1
| 13,379
|
A
|
C
| 8
| 121,944
| 0.000066
|
downstream_gene_variant,non_coding_transcript_exon_variant,splice_region_variant&intron_variant&non_coding_transcript_variant
| -7.401862
|
1
| 13,380
|
C
|
G
| 1,013
| 123,116
| 0.008228
|
downstream_gene_variant,non_coding_transcript_exon_variant,splice_region_variant&intron_variant&non_coding_transcript_variant
| 0.374008
|
1
| 13,382
|
C
|
A
| 1
| 123,030
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant,splice_region_variant&intron_variant&non_coding_transcript_variant
| -4.156961
|
1
| 13,393
|
C
|
G
| 25
| 121,396
| 0.000206
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant,non_coding_transcript_exon_variant
| -1.602325
|
1
| 13,414
|
C
|
T
| 14
| 113,144
| 0.000124
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.342119
|
1
| 13,420
|
G
|
A
| 3
| 123,746
| 0.000024
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.346048
|
1
| 13,443
|
G
|
C
| 2
| 124,250
| 0.000016
|
downstream_gene_variant,intron_variant&non_coding_transcript_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.918862
|
1
| 13,453
|
T
|
C
| 36
| 124,002
| 0.00029
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant,splice_region_variant&non_coding_transcript_exon_variant
| -4.193646
|
1
| 13,461
|
G
|
C
| 1
| 124,584
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -4.513961
|
1
| 13,472
|
C
|
T
| 1
| 125,178
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -2.686877
|
1
| 13,480
|
C
|
G
| 1
| 125,644
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -3.004028
|
1
| 13,487
|
C
|
A
| 1
| 126,048
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.461505
|
1
| 13,489
|
G
|
A
| 1
| 126,024
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.235251
|
1
| 13,494
|
A
|
G
| 205
| 125,462
| 0.001634
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.088883
|
1
| 13,503
|
C
|
T
| 6
| 126,218
| 0.000048
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| 0.990362
|
1
| 13,504
|
G
|
A
| 318
| 124,512
| 0.002554
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| 0.753902
|
1
| 13,528
|
C
|
G
| 475
| 128,284
| 0.003703
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -0.923366
|
1
| 13,532
|
G
|
A
| 2
| 130,170
| 0.000015
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.536485
|
1
| 13,543
|
T
|
G
| 12
| 132,678
| 0.00009
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -0.76161
|
1
| 13,550
|
G
|
A
| 1,388
| 133,642
| 0.010386
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.446665
|
1
| 13,556
|
G
|
A
| 1
| 135,268
| 0.000007
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.445668
|
1
| 13,556
|
G
|
C
| 7
| 135,260
| 0.000052
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.593228
|
1
| 13,557
|
G
|
A
| 86
| 135,210
| 0.000636
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -0.793894
|
1
| 13,573
|
C
|
A
| 105
| 135,912
| 0.000773
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.461898
|
1
| 13,584
|
A
|
G
| 1
| 138,784
| 0.000007
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.28411
|
1
| 13,592
|
G
|
A
| 2
| 139,264
| 0.000014
|
downstream_gene_variant,non_coding_transcript_exon_variant,regulatory_region_variant
| -1.286636
|
1
| 13,603
|
G
|
C
| 2
| 139,964
| 0.000014
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -0.990186
|
1
| 13,610
|
G
|
C
| 1
| 140,018
| 0.000007
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.047308
|
1
| 13,681
|
G
|
A
| 4
| 139,018
| 0.000029
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.127706
|
1
| 13,694
|
G
|
A
| 11
| 133,594
| 0.000082
|
downstream_gene_variant,non_coding_transcript_exon_variant
| 0.020196
|
1
| 13,706
|
C
|
A
| 2
| 131,524
| 0.000015
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.505927
|
1
| 13,712
|
A
|
T
| 1
| 130,574
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.293034
|
1
| 13,740
|
T
|
G
| 21
| 124,156
| 0.000169
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.383737
|
1
| 13,745
|
T
|
C
| 28
| 122,926
| 0.000228
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.225861
|
1
| 13,749
|
G
|
A
| 4
| 122,350
| 0.000033
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.428592
|
1
| 13,756
|
C
|
T
| 63
| 120,684
| 0.000522
|
downstream_gene_variant,non_coding_transcript_exon_variant
| 0.658303
|
1
| 13,760
|
G
|
A
| 348
| 119,784
| 0.002905
|
downstream_gene_variant,non_coding_transcript_exon_variant
| 0.625579
|
1
| 13,774
|
C
|
T
| 284
| 119,186
| 0.002383
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -0.931566
|
1
| 13,844
|
G
|
A
| 6
| 122,370
| 0.000049
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.538078
|
1
| 13,845
|
C
|
T
| 2
| 122,438
| 0.000016
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.534449
|
1
| 13,849
|
T
|
C
| 2
| 122,132
| 0.000016
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.474203
|
1
| 13,851
|
C
|
T
| 1
| 121,668
| 0.000008
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -0.593196
|
1
| 13,878
|
G
|
A
| 3
| 107,604
| 0.000028
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -2.166955
|
1
| 13,883
|
G
|
T
| 3
| 105,866
| 0.000028
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -0.304819
|
1
| 13,892
|
A
|
C
| 2
| 98,538
| 0.00002
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.502114
|
1
| 13,911
|
A
|
C
| 2
| 91,252
| 0.000022
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.61403
|
1
| 13,918
|
C
|
A
| 1
| 82,048
| 0.000012
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.485824
|
1
| 13,919
|
C
|
G
| 4
| 81,400
| 0.000049
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.51154
|
1
| 13,934
|
C
|
T
| 1
| 75,782
| 0.000013
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.388623
|
1
| 13,949
|
T
|
C
| 178
| 68,398
| 0.002602
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -0.997267
|
1
| 13,949
|
T
|
G
| 3
| 68,452
| 0.000044
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.45747
|
1
| 13,951
|
G
|
C
| 1
| 67,538
| 0.000015
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.199699
|
1
| 13,958
|
C
|
T
| 4
| 62,614
| 0.000064
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.291964
|
1
| 13,998
|
C
|
G
| 2
| 59,574
| 0.000034
|
downstream_gene_variant,non_coding_transcript_exon_variant
| -1.970886
|
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