README.md

metadata

license: mit
task_categories:
  - feature-extraction
  - other
tags:
  - proteomics
  - mass-spectrometry
  - peptide-search
  - bioinformatics
size_categories:
  - n<1K

MS/MS Search Sample Data

Dataset Description

This dataset contains sample mass spectrometry data and peptide database for demonstrating the Specollate/ProteoRift search pipeline.

Contents

Raw Data

Spectra Files (MGF format):

• 1DLC012615QE_RRAG_006B_rep2.mgf - Sample MS/MS spectra
• 1DLC012615QE_RRAG_014B_rep1.mgf - Sample MS/MS spectra

Peptide Database:

• human-peptidome-subset.fasta - Subset of human peptide sequences

Preprocessed Data (Optional)

• specs.pkl - Preprocessed spectra ready for search
• Metadata files for quick demo runs